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Spatial Covariance Constraints for Gaussian Mixture Models

Hanzhang Lu, Keiran Malott, Venkat Suprabath Bitra, Kirsty Milligan, Sanjeena Subedi, Edana Cassol, Vinita Chauhan, Connor McNairn, Bryan Muir, Prarthana Pasricha, Sangeeta Murugkar, Rowan Thomson, Andrew Jirasek, Jeffrey L. Andrews

TL;DR

The paper tackles the challenge of clustering high-dimensional spatial data with Gaussian mixtures by introducing SpatGMM, a finite mixture model that imposes a spatially constrained covariance via a sigmoid-decay structure. This approach yields a parsimonious per-component covariance with a fixed, small number of parameters, enabling scalable clustering of tensor-valued spatial data while preserving spatial dependencies. Parameter estimation is achieved through a novel EM variant that incorporates generalized least squares (GLS), including E-step, three M-steps (updates for mixing proportions and means, GLS-based spatial parameters, and the sigmoid shape), and optimization of the sigmoid parameter. Through simulation studies and a Raman spectroscopy application, SpatGMM demonstrates superior clustering accuracy and effective model selection compared to competing methods, underscoring its practical value for spatially structured, multi-way data analysis.

Abstract

Although extensive research exists in spatial modeling, few studies have addressed finite mixture model-based clustering methods for spatial data. Finite mixture models, especially Gaussian mixture models, particularly suffer from high dimensionality due to the number of free covariance parameters. This study introduces a spatial covariance constraint for Gaussian mixture models that requires only four free parameters for each component, independent of dimensionality. Using a coordinate system, the spatially constrained Gaussian mixture model enables clustering of multi-way spatial data and inference of spatial patterns. The parameter estimation is conducted by combining the expectation-maximization (EM) algorithm with the generalized least squares (GLS) estimator. Simulation studies and applications to Raman spectroscopy data are provided to demonstrate the proposed model.

Spatial Covariance Constraints for Gaussian Mixture Models

TL;DR

The paper tackles the challenge of clustering high-dimensional spatial data with Gaussian mixtures by introducing SpatGMM, a finite mixture model that imposes a spatially constrained covariance via a sigmoid-decay structure. This approach yields a parsimonious per-component covariance with a fixed, small number of parameters, enabling scalable clustering of tensor-valued spatial data while preserving spatial dependencies. Parameter estimation is achieved through a novel EM variant that incorporates generalized least squares (GLS), including E-step, three M-steps (updates for mixing proportions and means, GLS-based spatial parameters, and the sigmoid shape), and optimization of the sigmoid parameter. Through simulation studies and a Raman spectroscopy application, SpatGMM demonstrates superior clustering accuracy and effective model selection compared to competing methods, underscoring its practical value for spatially structured, multi-way data analysis.

Abstract

Although extensive research exists in spatial modeling, few studies have addressed finite mixture model-based clustering methods for spatial data. Finite mixture models, especially Gaussian mixture models, particularly suffer from high dimensionality due to the number of free covariance parameters. This study introduces a spatial covariance constraint for Gaussian mixture models that requires only four free parameters for each component, independent of dimensionality. Using a coordinate system, the spatially constrained Gaussian mixture model enables clustering of multi-way spatial data and inference of spatial patterns. The parameter estimation is conducted by combining the expectation-maximization (EM) algorithm with the generalized least squares (GLS) estimator. Simulation studies and applications to Raman spectroscopy data are provided to demonstrate the proposed model.
Paper Structure (21 sections, 30 equations, 7 figures, 8 tables)

This paper contains 21 sections, 30 equations, 7 figures, 8 tables.

Figures (7)

  • Figure 1: Decay curves for the quadratic (left) and sigmoid (right) models.
  • Figure 2: Simulated spatial maps from Gaussian noise (left), quadratic decay (middle), and sigmoid decay (right) models.
  • Figure 3: Visualization of the first observed tensor from each of the three groups in simulation design I.
  • Figure 4: Raman spectra of dosimetric film at two different dosage levels.
  • Figure 5: Schematic representation of the RS sampling protocol. (i) Macroscopic view of the irradiated EBT-3 film ($2.5 \times 2.5$ cm). (ii) The ROI comprises an array of 400 separate sub-ROIs (grids) arranged in a $20 \times 20$ pattern. (iii) Microscopic view of a sub-ROI, illustrating the $10 \times 10$ point-scan geometry.
  • ...and 2 more figures