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Adaptation of Foundation Models for Medical Image Analysis: Strategies, Challenges, and Future Directions

Karma Phuntsho, Abdullah, Kyungmi Lee, Ickjai Lee, Euijoon Ahn

TL;DR

Foundation models offer cross-domain generalization for medical image analysis but face real-world deployment hurdles such as domain shifts, data scarcity, and privacy constraints. The paper surveys architectures, pretraining paradigms, and adaptation strategies—ranging from supervised fine-tuning and parameter-efficient tuning to self-supervised and multimodal approaches—and highlights emerging directions like continual learning, federated adaptation, hybrid SSL, data-centric synthetic pipelines, and robust benchmarking. It provides a structured roadmap and identifies gaps to guide researchers toward clinically integrated, trustworthy adaptive FM systems. By detailing methods, trade-offs, and evaluation standards aligned with real-world clinical variability, the work aims to accelerate practical adoption and patient-centered impact.

Abstract

Foundation models (FMs) have emerged as a transformative paradigm in medical image analysis, offering the potential to provide generalizable, task-agnostic solutions across a wide range of clinical tasks and imaging modalities. Their capacity to learn transferable representations from large-scale data has the potential to address the limitations of conventional task-specific models. However, adaptation of FMs to real-world clinical practice remains constrained by key challenges, including domain shifts, limited availability of high-quality annotated data, substantial computational demands, and strict privacy requirements. This review presents a comprehensive assessment of strategies for adapting FMs to the specific demands of medical imaging. We examine approaches such as supervised fine-tuning, domain-specific pretraining, parameter-efficient fine-tuning, self-supervised learning, hybrid methods, and multimodal or cross-modal frameworks. For each, we evaluate reported performance gains, clinical applicability, and limitations, while identifying trade-offs and unresolved challenges that prior reviews have often overlooked. Beyond these established techniques, we also highlight emerging directions aimed at addressing current gaps. These include continual learning to enable dynamic deployment, federated and privacy-preserving approaches to safeguard sensitive data, hybrid self-supervised learning to enhance data efficiency, data-centric pipelines that combine synthetic generation with human-in-the-loop validation, and systematic benchmarking to assess robust generalization under real-world clinical variability. By outlining these strategies and associated research gaps, this review provides a roadmap for developing adaptive, trustworthy, and clinically integrated FMs capable of meeting the demands of real-world medical imaging.

Adaptation of Foundation Models for Medical Image Analysis: Strategies, Challenges, and Future Directions

TL;DR

Foundation models offer cross-domain generalization for medical image analysis but face real-world deployment hurdles such as domain shifts, data scarcity, and privacy constraints. The paper surveys architectures, pretraining paradigms, and adaptation strategies—ranging from supervised fine-tuning and parameter-efficient tuning to self-supervised and multimodal approaches—and highlights emerging directions like continual learning, federated adaptation, hybrid SSL, data-centric synthetic pipelines, and robust benchmarking. It provides a structured roadmap and identifies gaps to guide researchers toward clinically integrated, trustworthy adaptive FM systems. By detailing methods, trade-offs, and evaluation standards aligned with real-world clinical variability, the work aims to accelerate practical adoption and patient-centered impact.

Abstract

Foundation models (FMs) have emerged as a transformative paradigm in medical image analysis, offering the potential to provide generalizable, task-agnostic solutions across a wide range of clinical tasks and imaging modalities. Their capacity to learn transferable representations from large-scale data has the potential to address the limitations of conventional task-specific models. However, adaptation of FMs to real-world clinical practice remains constrained by key challenges, including domain shifts, limited availability of high-quality annotated data, substantial computational demands, and strict privacy requirements. This review presents a comprehensive assessment of strategies for adapting FMs to the specific demands of medical imaging. We examine approaches such as supervised fine-tuning, domain-specific pretraining, parameter-efficient fine-tuning, self-supervised learning, hybrid methods, and multimodal or cross-modal frameworks. For each, we evaluate reported performance gains, clinical applicability, and limitations, while identifying trade-offs and unresolved challenges that prior reviews have often overlooked. Beyond these established techniques, we also highlight emerging directions aimed at addressing current gaps. These include continual learning to enable dynamic deployment, federated and privacy-preserving approaches to safeguard sensitive data, hybrid self-supervised learning to enhance data efficiency, data-centric pipelines that combine synthetic generation with human-in-the-loop validation, and systematic benchmarking to assess robust generalization under real-world clinical variability. By outlining these strategies and associated research gaps, this review provides a roadmap for developing adaptive, trustworthy, and clinically integrated FMs capable of meeting the demands of real-world medical imaging.

Paper Structure

This paper contains 43 sections, 10 equations, 2 figures, 11 tables.

Figures (2)

  • Figure 1: Figure illustrates key architectural innovations in computer vision that have shaped FMs. (a) Vision Transformer (ViT) introduced scalable transformer-based image representations; (b) Masked Autoencoder (MAE) improved feature learning through masked image reconstruction; (c) SAM enabled promptable segmentation across diverse domains with minimal tuning; (d) Hybrid architectures combine CNNs and transformers to capture both local features and global context. Together, these advances have enhanced the scalability, generalization, and transferability of modern FMs across many visual tasks.
  • Figure 2: Taxonomy of PEFT methods for MIA, highlighting their adaptation and use across a range of medical tasks.